Super Enhancer Details

General details

Super-Enhancer ID:	SE_00065
Genomic locus:	chr4:185665984-185749263
Size/Length:	83279 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001995
Gene Symbol:	ACSL1
Chromosome:	chr4
TSS:	185676748 (Transcription start site)
TES:	185747268 (Transcription end site)
Strand:	-
Number of Exons:	21
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr4:185665984-185749263
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00065

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004622	SE_00065	chr4	185665984	185679814	13830	1386.91
C004623	SE_00065	chr4	185680714	185686577	5863	1382.44
C004624	SE_00065	chr4	185686693	185690330	3637	645.36
C004625	SE_00065	chr4	185692861	185695844	2983	267.85
C004626	SE_00065	chr4	185696203	185698829	2626	293.54
C004627	SE_00065	chr4	185698864	185702434	3570	690.02
C004628	SE_00065	chr4	185702927	185706107	3180	288.37
C004629	SE_00065	chr4	185710381	185717299	6918	2269.39
C004630	SE_00065	chr4	185717308	185749263	31955	3100