Super Enhancer Details

General details

Super-Enhancer ID:	SE_00066
Genomic locus:	chr7:137554800-137687567
Size/Length:	132767 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_194071
Gene Symbol:	CREB3L2
Chromosome:	chr7
TSS:	137597556 (Transcription start site)
TES:	137686847 (Transcription end site)
Strand:	-
Number of Exons:	4
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr7:137554800-137687567
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00066

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005557	SE_00066	chr7	137554800	137566401	11601	3100
C005558	SE_00066	chr7	137576986	137579280	2294	637.53
C005559	SE_00066	chr7	137583585	137585098	1513	157.88
C005560	SE_00066	chr7	137593572	137594890	1318	134.32
C005561	SE_00066	chr7	137605330	137606531	1201	120.13
C005562	SE_00066	chr7	137616605	137619364	2759	912.29
C005563	SE_00066	chr7	137620818	137622680	1862	241.94
C005564	SE_00066	chr7	137623864	137629505	5641	1814
C005565	SE_00066	chr7	137637604	137644773	7169	1587.02
C005566	SE_00066	chr7	137653931	137656225	2294	725.23
C005567	SE_00066	chr7	137657495	137667446	9951	3100
C005568	SE_00066	chr7	137667589	137682153	14564	3100
C005569	SE_00066	chr7	137682492	137687567	5075	3100