Super Enhancer Details

General details

Super-Enhancer ID:	SE_00067
Genomic locus:	chr1:203592356-203677659
Size/Length:	85303 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001684
Gene Symbol:	ATP2B4
Chromosome:	chr1
TSS:	203595914 (Transcription start site)
TES:	203713209 (Transcription end site)
Strand:	+
Number of Exons:	21
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr1:203592356-203677659
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00067

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C000596	SE_00067	chr1	203592356	203602845	10489	3100
C000597	SE_00067	chr1	203604360	203616001	11641	3100
C000598	SE_00067	chr1	203616879	203621118	4239	1091.74
C000599	SE_00067	chr1	203621389	203623096	1707	363.84
C000600	SE_00067	chr1	203629585	203648819	19234	3100
C000601	SE_00067	chr1	203649401	203653036	3635	629.7
C000602	SE_00067	chr1	203654063	203657130	3067	729.41
C000603	SE_00067	chr1	203658626	203667279	8653	3100
C000604	SE_00067	chr1	203668074	203672953	4879	803.15
C000605	SE_00067	chr1	203676489	203677659	1170	129.2