Super Enhancer Details

General details

Super-Enhancer ID:	SE_00068
Genomic locus:	chr7:104613167-104688337
Size/Length:	75170 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NR_024586
Gene Symbol:	KMT2E-AS1
Chromosome:	chr7
TSS:	104650988 (Transcription start site)
TES:	104654588 (Transcription end site)
Strand:	-
Number of Exons:	1
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr7:104613167-104688337
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00068

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005439	SE_00068	chr7	104613167	104615624	2457	1168.26
C005440	SE_00068	chr7	104616719	104627565	10846	3100
C005441	SE_00068	chr7	104627665	104631461	3796	263.94
C005442	SE_00068	chr7	104638125	104639501	1376	95.14
C005443	SE_00068	chr7	104640205	104646105	5900	2656.23
C005444	SE_00068	chr7	104646294	104659209	12915	3100
C005445	SE_00068	chr7	104660674	104663747	3073	675.99
C005446	SE_00068	chr7	104663948	104665919	1971	371.94
C005447	SE_00068	chr7	104678195	104680458	2263	301.68
C005448	SE_00068	chr7	104686095	104688337	2242	132.13