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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00069
Genomic locus: chr10:80826091-80955927
Size/Length: 129836 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NR_024431
Gene Symbol: ZMIZ1-AS1
Chromosome: chr10
TSS: 80703082 (Transcription start site)
TES: 80827205 (Transcription end site)
Strand: -
Number of Exons: 10
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr10:80826091-80955927
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00069

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C000916 SE_00069 chr10 80826091 80834885 8794 3100
C000917 SE_00069 chr10 80835486 80837630 2144 230.17
C000918 SE_00069 chr10 80838417 80848446 10029 2869.18
C000919 SE_00069 chr10 80851327 80853041 1714 236.67
C000920 SE_00069 chr10 80853140 80855925 2785 1374.65
C000921 SE_00069 chr10 80860916 80863250 2334 287.47
C000922 SE_00069 chr10 80864343 80865926 1583 176.12
C000923 SE_00069 chr10 80870833 80875259 4426 965.15
C000924 SE_00069 chr10 80875834 80877258 1424 142.03
C000925 SE_00069 chr10 80888474 80889493 1019 103
C000926 SE_00069 chr10 80894509 80900174 5665 3100
C000927 SE_00069 chr10 80900621 80903569 2948 499.48
C000928 SE_00069 chr10 80903939 80920953 17014 3100
C000929 SE_00069 chr10 80924225 80925866 1641 195.95
C000930 SE_00069 chr10 80935070 80937590 2520 367.95
C000931 SE_00069 chr10 80942972 80946487 3515 447.9
C000932 SE_00069 chr10 80947381 80949315 1934 269.15
C000933 SE_00069 chr10 80949701 80953418 3717 697.17
C000934 SE_00069 chr10 80954246 80955927 1681 282.78