Super Enhancer Details

General details

Super-Enhancer ID:	SE_00070
Genomic locus:	chr12:13287838-13378153
Size/Length:	90315 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001423
Gene Symbol:	EMP1
Chromosome:	chr12
TSS:	13349601 (Transcription start site)
TES:	13369708 (Transcription end site)
Strand:	+
Number of Exons:	5
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr12:13287838-13378153
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00070

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C001564	SE_00070	chr12	13287838	13289879	2041	394.08
C001565	SE_00070	chr12	13296911	13308696	11785	3100
C001566	SE_00070	chr12	13315754	13320821	5067	2051.12
C001567	SE_00070	chr12	13322001	13329284	7283	2695.7
C001568	SE_00070	chr12	13330671	13333635	2964	895.82
C001569	SE_00070	chr12	13341457	13343346	1889	263.23
C001570	SE_00070	chr12	13345381	13370697	25316	3100
C001571	SE_00070	chr12	13370814	13371899	1085	146.96
C001572	SE_00070	chr12	13372880	13378153	5273	2068.59