Super Enhancer Details

General details

Super-Enhancer ID:	SE_00071
Genomic locus:	chr10:63798002-63858499
Size/Length:	60497 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_032199
Gene Symbol:	ARID5B
Chromosome:	chr10
TSS:	63661012 (Transcription start site)
TES:	63856707 (Transcription end site)
Strand:	+
Number of Exons:	10
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr10:63798002-63858499
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00071

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C000872	SE_00071	chr10	63798002	63800020	2018	171.34
C000873	SE_00071	chr10	63800527	63802481	1954	150.15
C000874	SE_00071	chr10	63802514	63825244	22730	3100
C000875	SE_00071	chr10	63828569	63830713	2144	137.13
C000876	SE_00071	chr10	63830741	63837997	7256	1038.78
C000877	SE_00071	chr10	63838045	63846213	8168	3100
C000878	SE_00071	chr10	63847679	63849078	1399	113.97
C000879	SE_00071	chr10	63852380	63858499	6119	1544.54