Super Enhancer Details

General details

Super-Enhancer ID:	SE_00072
Genomic locus:	chr15:66992263-67099234
Size/Length:	106971 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_005585
Gene Symbol:	SMAD6
Chromosome:	chr15
TSS:	66994673 (Transcription start site)
TES:	67074337 (Transcription end site)
Strand:	+
Number of Exons:	4
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr15:66992263-67099234
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00072

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002311	SE_00072	chr15	66992263	66995850	3587	1441.96
C002312	SE_00072	chr15	66996218	67000669	4451	1788.57
C002313	SE_00072	chr15	67001504	67005180	3676	560.72
C002314	SE_00072	chr15	67005839	67009671	3832	516.39
C002315	SE_00072	chr15	67010170	67014993	4823	1130.36
C002316	SE_00072	chr15	67016002	67019953	3951	616.38
C002317	SE_00072	chr15	67020364	67024882	4518	2225.13
C002318	SE_00072	chr15	67025235	67030554	5319	1459.61
C002319	SE_00072	chr15	67032059	67041513	9454	3078.12
C002320	SE_00072	chr15	67041593	67062246	20653	3100
C002321	SE_00072	chr15	67062334	67073476	11142	1094.76
C002322	SE_00072	chr15	67080979	67083315	2336	344.27
C002323	SE_00072	chr15	67090286	67099234	8948	3100