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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00074
Genomic locus: chr3:16410887-16571067
Size/Length: 160180 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_015150
Gene Symbol: RFTN1
Chromosome: chr3
TSS: 16357351 (Transcription start site)
TES: 16555222 (Transcription end site)
Strand: -
Number of Exons: 10
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr3:16410887-16571067
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00074

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C004028 SE_00074 chr3 16410887 16415171 4284 578.55
C004029 SE_00074 chr3 16426323 16434127 7804 828.04
C004030 SE_00074 chr3 16439573 16445088 5515 1867.87
C004031 SE_00074 chr3 16445901 16451172 5271 2189.35
C004032 SE_00074 chr3 16456307 16461503 5196 1386.36
C004033 SE_00074 chr3 16467122 16471981 4859 1477.39
C004034 SE_00074 chr3 16477543 16484289 6746 3100
C004035 SE_00074 chr3 16487312 16488291 979 96.14
C004036 SE_00074 chr3 16488615 16492157 3542 1795.42
C004037 SE_00074 chr3 16495260 16497015 1755 176.03
C004038 SE_00074 chr3 16505075 16506927 1852 182.99
C004039 SE_00074 chr3 16508776 16511867 3091 314.77
C004040 SE_00074 chr3 16511942 16515571 3629 1440.6
C004041 SE_00074 chr3 16516265 16527112 10847 1368.36
C004042 SE_00074 chr3 16535514 16537371 1857 139.44
C004043 SE_00074 chr3 16546991 16556755 9764 3100
C004044 SE_00074 chr3 16557738 16558892 1154 117.21
C004045 SE_00074 chr3 16569241 16571067 1826 144.78