Super Enhancer Details

General details

Super-Enhancer ID:	SE_00075
Genomic locus:	chr11:75470367-75570895
Size/Length:	100528 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_003369
Gene Symbol:	UVRAG
Chromosome:	chr11
TSS:	75526211 (Transcription start site)
TES:	75855282 (Transcription end site)
Strand:	+
Number of Exons:	15
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr11:75470367-75570895
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00075

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C001307	SE_00075	chr11	75470367	75491042	20675	3100
C001308	SE_00075	chr11	75492478	75495426	2948	375.03
C001309	SE_00075	chr11	75498032	75499049	1017	103.21
C001310	SE_00075	chr11	75501289	75507793	6504	1230.04
C001311	SE_00075	chr11	75507838	75509361	1523	228.47
C001312	SE_00075	chr11	75512226	75515384	3158	438.97
C001313	SE_00075	chr11	75519246	75530817	11571	3100
C001314	SE_00075	chr11	75531377	75533034	1657	161.79
C001315	SE_00075	chr11	75533849	75539703	5854	3100
C001316	SE_00075	chr11	75539819	75542180	2361	537.04
C001317	SE_00075	chr11	75549243	75553408	4165	1217.22
C001318	SE_00075	chr11	75560582	75564205	3623	1819.04
C001319	SE_00075	chr11	75565480	75567134	1654	150.53
C001320	SE_00075	chr11	75568733	75570895	2162	398.32