Super Enhancer Details

General details

Super-Enhancer ID:	SE_00076
Genomic locus:	chr3:30638188-30736557
Size/Length:	98369 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001024847
Gene Symbol:	TGFBR2
Chromosome:	chr3
TSS:	30647993 (Transcription start site)
TES:	30735633 (Transcription end site)
Strand:	+
Number of Exons:	7
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr3:30638188-30736557
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00076

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004059	SE_00076	chr3	30638188	30640146	1958	285.57
C004060	SE_00076	chr3	30645147	30675031	29884	3114.08
C004061	SE_00076	chr3	30675836	30678125	2289	331.9
C004062	SE_00076	chr3	30679258	30682227	2969	362.24
C004063	SE_00076	chr3	30682483	30689130	6647	2966.11
C004064	SE_00076	chr3	30689321	30691023	1702	94.52
C004065	SE_00076	chr3	30695644	30707700	12056	2503.64
C004066	SE_00076	chr3	30708091	30710680	2589	545.31
C004067	SE_00076	chr3	30712977	30736557	23580	2163.91