Toggle navigation

  • Home
  • Browse Database
  • Detailed Search
  • Visualize & Send Data
  • Download Data
  • Overlap Analysis
  • Statistics
  • Documentation
  • Data Sources
  • Submit Data
  • Contact Us
  • News & Tweets

Follow @dbSUPER_THU

Super Enhancer Details

  1. Home
  2. Browse
  3. Details

General details

Super-Enhancer ID: SE_00077
Genomic locus: chr5:31911610-32078119
Size/Length: 166509 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NR_036241
Gene Symbol: MIR4279
Chromosome: chr5
TSS: 31936207 (Transcription start site)
TES: 31936265 (Transcription end site)
Strand: -
Number of Exons: 1
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr5:31911610-32078119
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00077

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C004653 SE_00077 chr5 31911610 31916454 4844 906
C004654 SE_00077 chr5 31916471 31919690 3219 441.05
C004655 SE_00077 chr5 31923350 31925457 2107 246.25
C004656 SE_00077 chr5 31928538 31930488 1950 569.65
C004657 SE_00077 chr5 31935164 31947908 12744 3100
C004658 SE_00077 chr5 31950324 31952883 2559 200.08
C004659 SE_00077 chr5 31954599 31955587 988 98.15
C004660 SE_00077 chr5 31961636 31964857 3221 1222.63
C004661 SE_00077 chr5 31965989 31968158 2169 366.9
C004662 SE_00077 chr5 31974462 31977189 2727 395.59
C004663 SE_00077 chr5 31978924 31982437 3513 226.43
C004664 SE_00077 chr5 31982503 31985175 2672 410.63
C004665 SE_00077 chr5 31986382 31994590 8208 3100
C004666 SE_00077 chr5 31998200 32003795 5595 1049.95
C004667 SE_00077 chr5 32013107 32014989 1882 320.07
C004668 SE_00077 chr5 32015484 32021670 6186 3100
C004669 SE_00077 chr5 32026061 32034937 8876 3100
C004670 SE_00077 chr5 32042552 32045636 3084 204.13
C004671 SE_00077 chr5 32047042 32048308 1266 94.39
C004672 SE_00077 chr5 32055104 32060465 5361 1494.33
C004673 SE_00077 chr5 32066467 32068153 1686 154.87
C004674 SE_00077 chr5 32076502 32078119 1617 315.5