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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00078
Genomic locus: chr21:35094425-35216685
Size/Length: 122260 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_001697
Gene Symbol: ATP5O
Chromosome: chr21
TSS: 35275756 (Transcription start site)
TES: 35288158 (Transcription end site)
Strand: -
Number of Exons: 7
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr21:35094425-35216685
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00078

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C003787 SE_00078 chr21 35094425 35095673 1248 155.64
C003788 SE_00078 chr21 35098704 35100576 1872 321.57
C003789 SE_00078 chr21 35103046 35105158 2112 228.67
C003790 SE_00078 chr21 35108669 35110187 1518 153.18
C003791 SE_00078 chr21 35121618 35125536 3918 1561.01
C003792 SE_00078 chr21 35125722 35129595 3873 774.26
C003793 SE_00078 chr21 35130056 35136829 6773 2610.9
C003794 SE_00078 chr21 35145977 35149314 3337 488.61
C003795 SE_00078 chr21 35152091 35167790 15699 2251.92
C003796 SE_00078 chr21 35168337 35178240 9903 3100
C003797 SE_00078 chr21 35178383 35180279 1896 209.32
C003798 SE_00078 chr21 35180489 35188102 7613 3100
C003799 SE_00078 chr21 35188352 35190778 2426 227.24
C003800 SE_00078 chr21 35190954 35202178 11224 2691.11
C003801 SE_00078 chr21 35202271 35204478 2207 295.16
C003802 SE_00078 chr21 35212865 35216685 3820 1825.63