Super Enhancer Details

General details

Super-Enhancer ID:	SE_00079
Genomic locus:	chr3:15283620-15404219
Size/Length:	120599 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_004844
Gene Symbol:	SH3BP5
Chromosome:	chr3
TSS:	15295862 (Transcription start site)
TES:	15374136 (Transcription end site)
Strand:	-
Number of Exons:	9
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr3:15283620-15404219
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00079

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004006	SE_00079	chr3	15283620	15285703	2083	110.89
C004007	SE_00079	chr3	15293875	15299851	5976	909.45
C004008	SE_00079	chr3	15300310	15304197	3887	426.07
C004009	SE_00079	chr3	15304378	15315741	11363	3100
C004010	SE_00079	chr3	15320396	15322527	2131	335.45
C004011	SE_00079	chr3	15327118	15331327	4209	1229.53
C004012	SE_00079	chr3	15331987	15343946	11959	2966.48
C004013	SE_00079	chr3	15350875	15353011	2136	433.78
C004014	SE_00079	chr3	15354603	15375050	20447	3091.03
C004015	SE_00079	chr3	15383466	15385877	2411	199.25
C004016	SE_00079	chr3	15387728	15390176	2448	234.28
C004017	SE_00079	chr3	15401659	15404219	2560	902.78