Super Enhancer Details

General details

Super-Enhancer ID:	SE_00081
Genomic locus:	chr2:64010624-64126304
Size/Length:	115680 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001001521
Gene Symbol:	UGP2
Chromosome:	chr2
TSS:	64069013 (Transcription start site)
TES:	64118696 (Transcription end site)
Strand:	+
Number of Exons:	10
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr2:64010624-64126304
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00081

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C003301	SE_00081	chr2	64010624	64014898	4274	1884.51
C003302	SE_00081	chr2	64015241	64019474	4233	2360.43
C003303	SE_00081	chr2	64029382	64031748	2366	353.22
C003304	SE_00081	chr2	64041027	64044334	3307	488.96
C003305	SE_00081	chr2	64044540	64049988	5448	2185.64
C003306	SE_00081	chr2	64051826	64056537	4711	2047.4
C003307	SE_00081	chr2	64066678	64084431	17753	3100
C003308	SE_00081	chr2	64085990	64094558	8568	1866.12
C003309	SE_00081	chr2	64097248	64104544	7296	1968.51
C003310	SE_00081	chr2	64108115	64111456	3341	326.06
C003311	SE_00081	chr2	64113232	64121397	8165	928.01
C003312	SE_00081	chr2	64124829	64126304	1475	143.22