Toggle navigation

  • Home
  • Browse Database
  • Detailed Search
  • Visualize & Send Data
  • Download Data
  • Overlap Analysis
  • Statistics
  • Documentation
  • Data Sources
  • Submit Data
  • Contact Us
  • News & Tweets

Follow @dbSUPER_THU

Super Enhancer Details

  1. Home
  2. Browse
  3. Details

General details

Super-Enhancer ID: SE_00082
Genomic locus: chr10:26726102-26854803
Size/Length: 128701 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_019043
Gene Symbol: APBB1IP
Chromosome: chr10
TSS: 26727265 (Transcription start site)
TES: 26856732 (Transcription end site)
Strand: +
Number of Exons: 15
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr10:26726102-26854803
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00082

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C000798 SE_00082 chr10 26726102 26736445 10343 3100
C000799 SE_00082 chr10 26744154 26745373 1219 173.49
C000800 SE_00082 chr10 26745382 26747514 2132 551.09
C000801 SE_00082 chr10 26750453 26754436 3983 789.15
C000802 SE_00082 chr10 26754543 26755513 970 194.93
C000803 SE_00082 chr10 26755869 26765516 9647 2287.81
C000804 SE_00082 chr10 26765524 26781786 16262 3100
C000805 SE_00082 chr10 26784934 26785830 896 175.73
C000806 SE_00082 chr10 26790009 26797432 7423 1802.51
C000807 SE_00082 chr10 26803981 26805245 1264 97.46
C000808 SE_00082 chr10 26811731 26813905 2174 266.37
C000809 SE_00082 chr10 26822148 26823095 947 91.67
C000810 SE_00082 chr10 26824276 26826359 2083 237.1
C000811 SE_00082 chr10 26832704 26834563 1859 183.42
C000812 SE_00082 chr10 26842284 26848539 6255 2789.91
C000813 SE_00082 chr10 26853766 26854803 1037 107.42