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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00083
Genomic locus: chr10:113890801-114005230
Size/Length: 114429 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_020918
Gene Symbol: GPAM
Chromosome: chr10
TSS: 113909621 (Transcription start site)
TES: 113943537 (Transcription end site)
Strand: -
Number of Exons: 22
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr10:113890801-114005230
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00083

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C001044 SE_00083 chr10 113890801 113892440 1639 140.58
C001045 SE_00083 chr10 113897537 113902153 4616 780.04
C001046 SE_00083 chr10 113905185 113906587 1402 110.67
C001047 SE_00083 chr10 113909672 113913424 3752 309.72
C001048 SE_00083 chr10 113913720 113915109 1389 106.59
C001049 SE_00083 chr10 113919024 113923239 4215 551.54
C001050 SE_00083 chr10 113923562 113924993 1431 113.27
C001051 SE_00083 chr10 113925573 113929073 3500 402.85
C001052 SE_00083 chr10 113929902 113959918 30016 2120.77
C001053 SE_00083 chr10 113959921 113964749 4828 3100
C001054 SE_00083 chr10 113966591 113976792 10201 3100
C001055 SE_00083 chr10 113976955 113978532 1577 109.06
C001056 SE_00083 chr10 113982078 113983998 1920 139.98
C001057 SE_00083 chr10 113984108 113988695 4587 987.31
C001058 SE_00083 chr10 113989694 113992005 2311 185.33
C001059 SE_00083 chr10 114002037 114005230 3193 415.5