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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00084
Genomic locus: chr15:57842551-58002339
Size/Length: 159788 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_001018091
Gene Symbol: GCOM1
Chromosome: chr15
TSS: 57884101 (Transcription start site)
TES: 58009755 (Transcription end site)
Strand: +
Number of Exons: 13
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr15:57842551-58002339
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00084

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C002201 SE_00084 chr15 57842551 57845174 2623 335.8
C002202 SE_00084 chr15 57852722 57855751 3029 360.09
C002203 SE_00084 chr15 57857165 57860039 2874 433.74
C002204 SE_00084 chr15 57869053 57871796 2743 684.95
C002205 SE_00084 chr15 57878433 57892977 14544 3100
C002206 SE_00084 chr15 57893478 57905497 12019 3100
C002207 SE_00084 chr15 57905570 57913595 8025 966.63
C002208 SE_00084 chr15 57922288 57923565 1277 130.83
C002209 SE_00084 chr15 57926797 57928596 1799 130.33
C002210 SE_00084 chr15 57936538 57941169 4631 454.76
C002211 SE_00084 chr15 57941277 57949844 8567 1510.35
C002212 SE_00084 chr15 57954590 57956542 1952 282.7
C002213 SE_00084 chr15 57956941 57960158 3217 473.92
C002214 SE_00084 chr15 57972223 57973708 1485 158.69
C002215 SE_00084 chr15 57976532 57979306 2774 886.48
C002216 SE_00084 chr15 57982352 57983874 1522 143.6
C002217 SE_00084 chr15 57984048 57985816 1768 121.28
C002218 SE_00084 chr15 57997414 58002339 4925 2921.86