Super Enhancer Details

General details

Super-Enhancer ID:	SE_00085
Genomic locus:	chr5:172158629-172235472
Size/Length:	76843 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_004417
Gene Symbol:	DUSP1
Chromosome:	chr5
TSS:	172195092 (Transcription start site)
TES:	172198203 (Transcription end site)
Strand:	-
Number of Exons:	4
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr5:172158629-172235472
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00085

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004960	SE_00085	chr5	172158629	172163092	4463	3100
C004961	SE_00085	chr5	172166923	172168881	1958	400.52
C004962	SE_00085	chr5	172174516	172177559	3043	453.94
C004963	SE_00085	chr5	172184040	172186434	2394	923.38
C004964	SE_00085	chr5	172191130	172206161	15031	3100
C004965	SE_00085	chr5	172214644	172229976	15332	3100
C004966	SE_00085	chr5	172232703	172235472	2769	746.33