Super Enhancer Details

General details

Super-Enhancer ID:	SE_00086
Genomic locus:	chr12:109535608-109627128
Size/Length:	91520 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001093
Gene Symbol:	ACACB
Chromosome:	chr12
TSS:	109577201 (Transcription start site)
TES:	109706030 (Transcription end site)
Strand:	+
Number of Exons:	52
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr12:109535608-109627128
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00086

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C001747	SE_00086	chr12	109535608	109538543	2935	1202.3
C001748	SE_00086	chr12	109547441	109550087	2646	1084.02
C001749	SE_00086	chr12	109550092	109558788	8696	3100
C001750	SE_00086	chr12	109558870	109560520	1650	138.85
C001751	SE_00086	chr12	109563476	109565928	2452	324.95
C001752	SE_00086	chr12	109566975	109604945	37970	1958.33
C001753	SE_00086	chr12	109606767	109609077	2310	267.65
C001754	SE_00086	chr12	109610959	109612523	1564	212.32
C001755	SE_00086	chr12	109612767	109614543	1776	180.91
C001756	SE_00086	chr12	109614582	109615978	1396	125.96
C001757	SE_00086	chr12	109620178	109621324	1146	114.86
C001758	SE_00086	chr12	109625606	109627128	1522	239.42