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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00087
Genomic locus: chr14:59707337-59839553
Size/Length: 132216 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_014992
Gene Symbol: DAAM1
Chromosome: chr14
TSS: 59730158 (Transcription start site)
TES: 59838123 (Transcription end site)
Strand: +
Number of Exons: 25
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr14:59707337-59839553
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00087

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C002001 SE_00087 chr14 59707337 59709360 2023 236.91
C002002 SE_00087 chr14 59714118 59715609 1491 114.21
C002003 SE_00087 chr14 59719074 59724191 5117 2534.55
C002004 SE_00087 chr14 59732412 59735032 2620 543.48
C002005 SE_00087 chr14 59737150 59746941 9791 3100
C002006 SE_00087 chr14 59747942 59749601 1659 388.11
C002007 SE_00087 chr14 59758594 59764299 5705 1295.89
C002008 SE_00087 chr14 59771742 59773878 2136 149.36
C002009 SE_00087 chr14 59774734 59776834 2100 210.28
C002010 SE_00087 chr14 59776931 59789479 12548 3100
C002011 SE_00087 chr14 59791021 59793916 2895 318.29
C002012 SE_00087 chr14 59798741 59806044 7303 3100
C002013 SE_00087 chr14 59809042 59810758 1716 98.84
C002014 SE_00087 chr14 59813475 59817243 3768 518.43
C002015 SE_00087 chr14 59818397 59820641 2244 439.3
C002016 SE_00087 chr14 59820752 59822420 1668 227.24
C002017 SE_00087 chr14 59822900 59832104 9204 3100
C002018 SE_00087 chr14 59837903 59839553 1650 199.12