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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00088
Genomic locus: chr18:60896801-61014593
Size/Length: 117792 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_000633
Gene Symbol: BCL2
Chromosome: chr18
TSS: 60790578 (Transcription start site)
TES: 60986613 (Transcription end site)
Strand: -
Number of Exons: 3
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr18:60896801-61014593
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00088

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C002875 SE_00088 chr18 60896801 60898627 1826 283.88
C002876 SE_00088 chr18 60899053 60901043 1990 184.57
C002877 SE_00088 chr18 60902942 60910035 7093 3100
C002878 SE_00088 chr18 60910735 60911481 746 98.45
C002879 SE_00088 chr18 60911509 60914309 2800 635.1
C002880 SE_00088 chr18 60914468 60916980 2512 195.96
C002881 SE_00088 chr18 60919456 60921936 2480 692.28
C002882 SE_00088 chr18 60923600 60941517 17917 3100
C002883 SE_00088 chr18 60948722 60951630 2908 328.4
C002884 SE_00088 chr18 60954096 60956558 2462 245.41
C002885 SE_00088 chr18 60964254 60971515 7261 1560.41
C002886 SE_00088 chr18 60973221 60977060 3839 319.99
C002887 SE_00088 chr18 60977702 60990810 13108 3100
C002888 SE_00088 chr18 61003258 61004355 1097 153.93
C002889 SE_00088 chr18 61013110 61014593 1483 142.39