Super Enhancer Details

General details

Super-Enhancer ID:	SE_00090
Genomic locus:	chr3:151975890-152053203
Size/Length:	77313 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_207294
Gene Symbol:	MBNL1
Chromosome:	chr3
TSS:	152017193 (Transcription start site)
TES:	152183569 (Transcription end site)
Strand:	+
Number of Exons:	8
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr3:151975890-152053203
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00090

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004355	SE_00090	chr3	151975890	151977618	1728	221.96
C004356	SE_00090	chr3	151982733	151992190	9457	3100
C004357	SE_00090	chr3	151993601	151995346	1745	117.62
C004358	SE_00090	chr3	151995650	152003671	8021	553.17
C004359	SE_00090	chr3	152005131	152007205	2074	174.26
C004360	SE_00090	chr3	152007920	152011008	3088	513.39
C004361	SE_00090	chr3	152015145	152029241	14096	3100
C004362	SE_00090	chr3	152031835	152043017	11182	878.1
C004363	SE_00090	chr3	152045499	152053203	7704	3100