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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00091
Genomic locus: chr17:27965032-28092446
Size/Length: 127414 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_138349
Gene Symbol: TP53I13
Chromosome: chr17
TSS: 27895738 (Transcription start site)
TES: 27900175 (Transcription end site)
Strand: +
Number of Exons: 7
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr17:27965032-28092446
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00091

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C002612 SE_00091 chr17 27965032 27974309 9277 3100
C002613 SE_00091 chr17 27974559 27975939 1380 140.63
C002614 SE_00091 chr17 27976276 27979268 2992 336.14
C002615 SE_00091 chr17 27980310 27982653 2343 505.07
C002616 SE_00091 chr17 27988188 27991166 2978 493.42
C002617 SE_00091 chr17 27991446 27993306 1860 269.25
C002618 SE_00091 chr17 27995879 27997583 1704 137.43
C002619 SE_00091 chr17 27999748 28006280 6532 2643.68
C002620 SE_00091 chr17 28008199 28012343 4144 1653.29
C002621 SE_00091 chr17 28013678 28015441 1763 809.85
C002622 SE_00091 chr17 28017284 28018899 1615 113.99
C002623 SE_00091 chr17 28019148 28020336 1188 264.01
C002624 SE_00091 chr17 28021237 28022782 1545 144.75
C002625 SE_00091 chr17 28025461 28027819 2358 810.55
C002626 SE_00091 chr17 28030637 28041919 11282 3100
C002627 SE_00091 chr17 28045681 28051592 5911 2804.93
C002628 SE_00091 chr17 28052798 28055159 2361 524.35
C002629 SE_00091 chr17 28058885 28060786 1901 199.06
C002630 SE_00091 chr17 28071035 28072252 1217 135.37
C002631 SE_00091 chr17 28073465 28075599 2134 166.96
C002632 SE_00091 chr17 28086553 28089449 2896 1088.19
C002633 SE_00091 chr17 28091255 28092446 1191 114.13