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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00093
Genomic locus: chr3:111569662-111692339
Size/Length: 122677 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_001134439
Gene Symbol: PHLDB2
Chromosome: chr3
TSS: 111578026 (Transcription start site)
TES: 111695364 (Transcription end site)
Strand: +
Number of Exons: 17
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr3:111569662-111692339
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00093

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C004213 SE_00093 chr3 111569662 111572063 2401 232.42
C004214 SE_00093 chr3 111577035 111593891 16856 3100
C004215 SE_00093 chr3 111597979 111599607 1628 164.85
C004216 SE_00093 chr3 111600532 111603232 2700 340.02
C004217 SE_00093 chr3 111603676 111606073 2397 233.28
C004218 SE_00093 chr3 111608490 111610593 2103 160.71
C004219 SE_00093 chr3 111610870 111612734 1864 223.59
C004220 SE_00093 chr3 111620300 111632664 12364 2101.82
C004221 SE_00093 chr3 111633707 111637388 3681 241.87
C004222 SE_00093 chr3 111638113 111639990 1877 156.88
C004223 SE_00093 chr3 111641548 111644049 2501 381.85
C004224 SE_00093 chr3 111644415 111646360 1945 156.36
C004225 SE_00093 chr3 111650658 111654218 3560 284.67
C004226 SE_00093 chr3 111654372 111657205 2833 442.4
C004227 SE_00093 chr3 111657828 111659792 1964 185.91
C004228 SE_00093 chr3 111661685 111667787 6102 936.28
C004229 SE_00093 chr3 111674787 111676102 1315 98.69
C004230 SE_00093 chr3 111677831 111688687 10856 2527.12
C004231 SE_00093 chr3 111690940 111692339 1399 91.26