Super Enhancer Details

General details

Super-Enhancer ID:	SE_00094
Genomic locus:	chr13:97862946-97961565
Size/Length:	98619 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_144778
Gene Symbol:	MBNL2
Chromosome:	chr13
TSS:	97874542 (Transcription start site)
TES:	98046374 (Transcription end site)
Strand:	+
Number of Exons:	8
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr13:97862946-97961565
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00094

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C001876	SE_00094	chr13	97862946	97865572	2626	1138.51
C001877	SE_00094	chr13	97873395	97880520	7125	3100
C001878	SE_00094	chr13	97881307	97884425	3118	174.33
C001879	SE_00094	chr13	97886668	97903988	17320	3100
C001880	SE_00094	chr13	97904503	97915025	10522	3100
C001881	SE_00094	chr13	97920341	97922561	2220	396.88
C001882	SE_00094	chr13	97924866	97934091	9225	1802.53
C001883	SE_00094	chr13	97935858	97938850	2992	316.77
C001884	SE_00094	chr13	97946516	97949273	2757	228.14
C001885	SE_00094	chr13	97953505	97956920	3415	382.64
C001886	SE_00094	chr13	97957997	97961565	3568	472.78