Super Enhancer Details

General details

Super-Enhancer ID:	SE_00095
Genomic locus:	chr20:45932249-45990848
Size/Length:	58599 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NR_024594
Gene Symbol:	LOC100131496
Chromosome:	chr20
TSS:	45947245 (Transcription start site)
TES:	45949498 (Transcription end site)
Strand:	+
Number of Exons:	1
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr20:45932249-45990848
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00095

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C003695	SE_00095	chr20	45932249	45934023	1774	306.3
C003696	SE_00095	chr20	45937008	45951185	14177	3100
C003697	SE_00095	chr20	45956592	45961152	4560	2022.02
C003698	SE_00095	chr20	45962072	45963498	1426	188.31
C003699	SE_00095	chr20	45963657	45965784	2127	276.73
C003700	SE_00095	chr20	45976764	45990848	14084	3100