Super Enhancer Details

General details

Super-Enhancer ID:	SE_00098
Genomic locus:	chr15:60637370-60720031
Size/Length:	82661 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001002858
Gene Symbol:	ANXA2
Chromosome:	chr15
TSS:	60639349 (Transcription start site)
TES:	60690185 (Transcription end site)
Strand:	-
Number of Exons:	13
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr15:60637370-60720031
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00098

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002225	SE_00098	chr15	60637370	60640790	3420	151.01
C002226	SE_00098	chr15	60644385	60646172	1787	97.48
C002227	SE_00098	chr15	60650406	60652290	1884	612.93
C002228	SE_00098	chr15	60652433	60657764	5331	2879.97
C002229	SE_00098	chr15	60660313	60670527	10214	3100
C002230	SE_00098	chr15	60671276	60677494	6218	1164.94
C002231	SE_00098	chr15	60677583	60693052	15469	3100
C002232	SE_00098	chr15	60698326	60701782	3456	749.24
C002233	SE_00098	chr15	60703454	60706966	3512	1056.22
C002234	SE_00098	chr15	60715840	60717964	2124	163.54
C002235	SE_00098	chr15	60718537	60720031	1494	118.83