Super Enhancer Details

General details

Super-Enhancer ID:	SE_00101
Genomic locus:	chr10:13849954-13946776
Size/Length:	96822 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_012247
Gene Symbol:	SEPHS1
Chromosome:	chr10
TSS:	13359437 (Transcription start site)
TES:	13390298 (Transcription end site)
Strand:	-
Number of Exons:	8
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr10:13849954-13946776
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00101

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C000759	SE_00101	chr10	13849954	13852543	2589	394.13
C000760	SE_00101	chr10	13856466	13859908	3442	1091.16
C000761	SE_00101	chr10	13861280	13864065	2785	403.31
C000762	SE_00101	chr10	13868492	13870532	2040	386.96
C000763	SE_00101	chr10	13871826	13874951	3125	753.3
C000764	SE_00101	chr10	13875039	13882917	7878	3100
C000765	SE_00101	chr10	13883116	13888399	5283	921.77
C000766	SE_00101	chr10	13889631	13891795	2164	352.76
C000767	SE_00101	chr10	13891945	13909690	17745	1310.45
C000768	SE_00101	chr10	13909879	13935325	25446	2435.46
C000769	SE_00101	chr10	13945701	13946776	1075	97.32