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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00102
Genomic locus: chr7:55111764-55209735
Size/Length: 97971 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_201283
Gene Symbol: EGFR
Chromosome: chr7
TSS: 55086724 (Transcription start site)
TES: 55238738 (Transcription end site)
Strand: +
Number of Exons: 16
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr7:55111764-55209735
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00102

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C005372 SE_00102 chr7 55111764 55114893 3129 332.4
C005373 SE_00102 chr7 55115887 55117421 1534 100.43
C005374 SE_00102 chr7 55119996 55122138 2142 319.39
C005375 SE_00102 chr7 55123314 55126130 2816 998.66
C005376 SE_00102 chr7 55127520 55131147 3627 1829.73
C005377 SE_00102 chr7 55131239 55135383 4144 3100
C005378 SE_00102 chr7 55135938 55144802 8864 3100
C005379 SE_00102 chr7 55148583 55151837 3254 426.76
C005380 SE_00102 chr7 55153143 55157620 4477 970.28
C005381 SE_00102 chr7 55165901 55169710 3809 988.27
C005382 SE_00102 chr7 55171060 55175741 4681 876.67
C005383 SE_00102 chr7 55177978 55180877 2899 449.41
C005384 SE_00102 chr7 55186599 55192239 5640 3100
C005385 SE_00102 chr7 55194668 55202994 8326 3100
C005386 SE_00102 chr7 55207503 55209735 2232 306.94