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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00103
Genomic locus: chr1:226837563-226928166
Size/Length: 90603 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_002221
Gene Symbol: ITPKB
Chromosome: chr1
TSS: 226819390 (Transcription start site)
TES: 226926876 (Transcription end site)
Strand: -
Number of Exons: 8
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr1:226837563-226928166
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00103

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C000659 SE_00103 chr1 226837563 226838821 1258 115.83
C000660 SE_00103 chr1 226838983 226840783 1800 184.48
C000661 SE_00103 chr1 226841040 226857064 16024 3100
C000662 SE_00103 chr1 226857079 226869283 12204 3100
C000663 SE_00103 chr1 226870276 226871984 1708 152.68
C000664 SE_00103 chr1 226872375 226881605 9230 2208.78
C000665 SE_00103 chr1 226883705 226886259 2554 313.29
C000666 SE_00103 chr1 226889060 226893178 4118 3100
C000667 SE_00103 chr1 226895483 226898785 3302 488.46
C000668 SE_00103 chr1 226899206 226902957 3751 290.8
C000669 SE_00103 chr1 226910268 226914123 3855 571.84
C000670 SE_00103 chr1 226914775 226916702 1927 335.72
C000671 SE_00103 chr1 226917314 226919816 2502 321.78
C000672 SE_00103 chr1 226919848 226928166 8318 2570.69