Super Enhancer Details

General details

Super-Enhancer ID:	SE_00105
Genomic locus:	chr1:21577701-21671990
Size/Length:	94289 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001397
Gene Symbol:	ECE1
Chromosome:	chr1
TSS:	21543739 (Transcription start site)
TES:	21606183 (Transcription end site)
Strand:	-
Number of Exons:	17
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr1:21577701-21671990
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00105

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C000081	SE_00105	chr1	21577701	21579895	2194	439.82
C000082	SE_00105	chr1	21580347	21582341	1994	236.29
C000083	SE_00105	chr1	21586822	21590872	4050	1982.56
C000084	SE_00105	chr1	21591080	21592640	1560	159.44
C000085	SE_00105	chr1	21594226	21595831	1605	186.87
C000086	SE_00105	chr1	21599778	21608523	8745	3100
C000087	SE_00105	chr1	21614625	21618295	3670	1160.23
C000088	SE_00105	chr1	21618558	21622245	3687	912.59
C000089	SE_00105	chr1	21622642	21627149	4507	1141.01
C000090	SE_00105	chr1	21628901	21632857	3956	995.04
C000091	SE_00105	chr1	21636649	21638133	1484	167.86
C000092	SE_00105	chr1	21640019	21654616	14597	2966.31
C000093	SE_00105	chr1	21656775	21671990	15215	3100