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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00106
Genomic locus: chr10:33481759-33627106
Size/Length: 145347 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_003873
Gene Symbol: NRP1
Chromosome: chr10
TSS: 33466418 (Transcription start site)
TES: 33623833 (Transcription end site)
Strand: -
Number of Exons: 17
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr10:33481759-33627106
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00106

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C000843 SE_00106 chr10 33481759 33486564 4805 983.83
C000844 SE_00106 chr10 33490350 33492011 1661 101.35
C000845 SE_00106 chr10 33493552 33494603 1051 91.02
C000846 SE_00106 chr10 33499801 33502798 2997 581.19
C000847 SE_00106 chr10 33503202 33506655 3453 390.58
C000848 SE_00106 chr10 33507619 33509434 1815 150.8
C000849 SE_00106 chr10 33515036 33516820 1784 105.39
C000850 SE_00106 chr10 33517788 33518907 1119 126.88
C000851 SE_00106 chr10 33521325 33526284 4959 1331.03
C000852 SE_00106 chr10 33533515 33535083 1568 102.43
C000853 SE_00106 chr10 33535113 33544436 9323 1732.12
C000854 SE_00106 chr10 33551369 33554766 3397 226.99
C000855 SE_00106 chr10 33560176 33564498 4322 1759.2
C000856 SE_00106 chr10 33564563 33566676 2113 247.03
C000857 SE_00106 chr10 33566699 33569995 3296 460.63
C000858 SE_00106 chr10 33580179 33582044 1865 125.66
C000859 SE_00106 chr10 33584524 33585988 1464 163.96
C000860 SE_00106 chr10 33586392 33588385 1993 124.51
C000861 SE_00106 chr10 33589691 33594325 4634 1310.98
C000862 SE_00106 chr10 33594719 33596835 2116 313.58
C000863 SE_00106 chr10 33599413 33600820 1407 176.97
C000864 SE_00106 chr10 33601353 33608511 7158 2728.78
C000865 SE_00106 chr10 33608994 33611784 2790 432.86
C000866 SE_00106 chr10 33611831 33613015 1184 147.35
C000867 SE_00106 chr10 33614161 33627106 12945 3100