Super Enhancer Details

General details

Super-Enhancer ID:	SE_00107
Genomic locus:	chr10:104497945-104579360
Size/Length:	81415 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_017787
Gene Symbol:	WBP1L
Chromosome:	chr10
TSS:	104535887 (Transcription start site)
TES:	104576021 (Transcription end site)
Strand:	+
Number of Exons:	4
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr10:104497945-104579360
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00107

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C001028	SE_00107	chr10	104497945	104499623	1678	91.16
C001029	SE_00107	chr10	104503068	104506382	3314	2125.42
C001030	SE_00107	chr10	104511224	104515468	4244	1817.2
C001031	SE_00107	chr10	104519046	104520092	1046	106.46
C001032	SE_00107	chr10	104523926	104525162	1236	138.11
C001033	SE_00107	chr10	104528707	104531356	2649	358.28
C001034	SE_00107	chr10	104532369	104547470	15101	3100
C001035	SE_00107	chr10	104548611	104549985	1374	93.7
C001036	SE_00107	chr10	104554579	104565212	10633	3100
C001037	SE_00107	chr10	104572633	104577249	4616	2041.49
C001038	SE_00107	chr10	104577828	104579360	1532	182.14