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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00108
Genomic locus: chr21:16329855-16439874
Size/Length: 110019 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_003489
Gene Symbol: NRIP1
Chromosome: chr21
TSS: 16333555 (Transcription start site)
TES: 16437126 (Transcription end site)
Strand: -
Number of Exons: 4
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr21:16329855-16439874
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00108

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C003746 SE_00108 chr21 16329855 16332406 2551 240.86
C003747 SE_00108 chr21 16334360 16335601 1241 116.09
C003748 SE_00108 chr21 16347489 16349654 2165 238.23
C003749 SE_00108 chr21 16357724 16359598 1874 117.99
C003750 SE_00108 chr21 16359658 16362664 3006 211.43
C003751 SE_00108 chr21 16363292 16365287 1995 188.58
C003752 SE_00108 chr21 16366709 16368121 1412 110.81
C003753 SE_00108 chr21 16370163 16373773 3610 410.76
C003754 SE_00108 chr21 16374108 16381253 7145 939.02
C003755 SE_00108 chr21 16383827 16391771 7944 1205.99
C003756 SE_00108 chr21 16391868 16394050 2182 155.34
C003757 SE_00108 chr21 16399139 16403649 4510 1305.97
C003758 SE_00108 chr21 16404091 16408025 3934 1040.28
C003759 SE_00108 chr21 16411178 16414254 3076 371.95
C003760 SE_00108 chr21 16419903 16439874 19971 3100