Super Enhancer Details

General details

Super-Enhancer ID:	SE_00109
Genomic locus:	chr17:53467780-53534629
Size/Length:	66849 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_012329
Gene Symbol:	MMD
Chromosome:	chr17
TSS:	53469973 (Transcription start site)
TES:	53499341 (Transcription end site)
Strand:	-
Number of Exons:	7
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr17:53467780-53534629
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00109

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002697	SE_00109	chr17	53467780	53469909	2129	343.08
C002698	SE_00109	chr17	53471561	53473790	2229	296.27
C002699	SE_00109	chr17	53479288	53482457	3169	670.85
C002700	SE_00109	chr17	53482572	53484253	1681	225.11
C002701	SE_00109	chr17	53484678	53501657	16979	3100
C002702	SE_00109	chr17	53503828	53505713	1885	388.02
C002703	SE_00109	chr17	53507503	53509584	2081	547.81
C002704	SE_00109	chr17	53509666	53513285	3619	1649.69
C002705	SE_00109	chr17	53513426	53515099	1673	230.82
C002706	SE_00109	chr17	53516350	53524732	8382	3100
C002707	SE_00109	chr17	53525659	53528200	2541	929.07
C002708	SE_00109	chr17	53529020	53534629	5609	1562.82