Super Enhancer Details

General details

Super-Enhancer ID:	SE_00111
Genomic locus:	chr15:48680867-48764053
Size/Length:	83186 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001948
Gene Symbol:	DUT
Chromosome:	chr15
TSS:	48623620 (Transcription start site)
TES:	48635570 (Transcription end site)
Strand:	+
Number of Exons:	7
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr15:48680867-48764053
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00111

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002161	SE_00111	chr15	48680867	48689393	8526	3100
C002162	SE_00111	chr15	48689509	48693624	4115	662.39
C002163	SE_00111	chr15	48696771	48710616	13845	3100
C002164	SE_00111	chr15	48719007	48721464	2457	246.02
C002165	SE_00111	chr15	48729896	48735259	5363	1212.45
C002166	SE_00111	chr15	48738952	48741205	2253	425.31
C002167	SE_00111	chr15	48741689	48745197	3508	471.17
C002168	SE_00111	chr15	48749777	48756163	6386	3100
C002169	SE_00111	chr15	48757098	48759753	2655	641.66
C002170	SE_00111	chr15	48760084	48761227	1143	126.05
C002171	SE_00111	chr15	48761276	48764053	2777	726.4