Super Enhancer Details

General details

Super-Enhancer ID:	SE_00112
Genomic locus:	chr3:129275498-129347842
Size/Length:	72344 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_015103
Gene Symbol:	PLXND1
Chromosome:	chr3
TSS:	129274055 (Transcription start site)
TES:	129325582 (Transcription end site)
Strand:	-
Number of Exons:	36
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr3:129275498-129347842
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00112

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004317	SE_00112	chr3	129275498	129280721	5223	1309.94
C004318	SE_00112	chr3	129281938	129284385	2447	328.23
C004319	SE_00112	chr3	129296408	129298337	1929	189.7
C004320	SE_00112	chr3	129305417	129325570	20153	3100
C004321	SE_00112	chr3	129325694	129329674	3980	3100
C004322	SE_00112	chr3	129329960	129332224	2264	282.48
C004323	SE_00112	chr3	129332965	129338575	5610	1277.99
C004324	SE_00112	chr3	129340805	129347842	7037	3100