Super Enhancer Details

General details

Super-Enhancer ID:	SE_00113
Genomic locus:	chr12:109187192-109251439
Size/Length:	64247 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001161331
Gene Symbol:	SSH1
Chromosome:	chr12
TSS:	109185694 (Transcription start site)
TES:	109221327 (Transcription end site)
Strand:	-
Number of Exons:	13
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr12:109187192-109251439
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00113

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C001738	SE_00113	chr12	109187192	109188655	1463	225.89
C001739	SE_00113	chr12	109192533	109199888	7355	3100
C001740	SE_00113	chr12	109207886	109211279	3393	821.52
C001741	SE_00113	chr12	109213900	109215240	1340	171.58
C001742	SE_00113	chr12	109215517	109223964	8447	3100
C001743	SE_00113	chr12	109224414	109229671	5257	3100
C001744	SE_00113	chr12	109229734	109235295	5561	2355.65
C001745	SE_00113	chr12	109239543	109240926	1383	153.15
C001746	SE_00113	chr12	109244424	109251439	7015	3100