Super Enhancer Details

General details

Super-Enhancer ID:	SE_00114
Genomic locus:	chr6:11186994-11264756
Size/Length:	77762 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_182966
Gene Symbol:	NEDD9
Chromosome:	chr6
TSS:	11183530 (Transcription start site)
TES:	11232915 (Transcription end site)
Strand:	-
Number of Exons:	6
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr6:11186994-11264756
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00114

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005060	SE_00114	chr6	11186994	11189532	2538	308.32
C005061	SE_00114	chr6	11193208	11200050	6842	2227.49
C005062	SE_00114	chr6	11200250	11204038	3788	558.56
C005063	SE_00114	chr6	11204966	11205864	898	115.23
C005064	SE_00114	chr6	11206173	11235315	29142	3100
C005065	SE_00114	chr6	11235591	11237802	2211	533.83
C005066	SE_00114	chr6	11241667	11244585	2918	802.65
C005067	SE_00114	chr6	11245067	11246747	1680	140.81
C005068	SE_00114	chr6	11250648	11254037	3389	1137.2
C005069	SE_00114	chr6	11261917	11264756	2839	1132.21