Super Enhancer Details

General details

Super-Enhancer ID:	SE_00115
Genomic locus:	chr17:40498201-40589655
Size/Length:	91454 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_139276
Gene Symbol:	STAT3
Chromosome:	chr17
TSS:	40465342 (Transcription start site)
TES:	40540405 (Transcription end site)
Strand:	-
Number of Exons:	24
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr17:40498201-40589655
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00115

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002676	SE_00115	chr17	40498201	40500834	2633	464.7
C002677	SE_00115	chr17	40506452	40508560	2108	501.99
C002678	SE_00115	chr17	40513193	40515319	2126	184.02
C002679	SE_00115	chr17	40515876	40517807	1931	178.79
C002680	SE_00115	chr17	40529898	40532391	2493	654.74
C002681	SE_00115	chr17	40537903	40541983	4080	3100
C002682	SE_00115	chr17	40550103	40579058	28955	3100
C002683	SE_00115	chr17	40579733	40581586	1853	266.87
C002684	SE_00115	chr17	40582938	40584465	1527	371.95
C002685	SE_00115	chr17	40587073	40589655	2582	795.32