Super Enhancer Details

General details

Super-Enhancer ID:	SE_00117
Genomic locus:	chr19:39126719-39226327
Size/Length:	99608 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_004924
Gene Symbol:	ACTN4
Chromosome:	chr19
TSS:	39138266 (Transcription start site)
TES:	39221171 (Transcription end site)
Strand:	+
Number of Exons:	21
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr19:39126719-39226327
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00117

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C003009	SE_00117	chr19	39126719	39127932	1213	114.2
C003010	SE_00117	chr19	39130118	39131354	1236	143.67
C003011	SE_00117	chr19	39138153	39152329	14176	3100
C003012	SE_00117	chr19	39152475	39162940	10465	3100
C003013	SE_00117	chr19	39165147	39167595	2448	422.41
C003014	SE_00117	chr19	39168564	39169764	1200	103.34
C003015	SE_00117	chr19	39172768	39180290	7522	3100
C003016	SE_00117	chr19	39182049	39186979	4930	1320.26
C003017	SE_00117	chr19	39195443	39196888	1445	140.09
C003018	SE_00117	chr19	39197743	39199485	1742	187.22
C003019	SE_00117	chr19	39209697	39211399	1702	236.36
C003020	SE_00117	chr19	39212554	39213937	1383	98.5
C003021	SE_00117	chr19	39223455	39224893	1438	105.05
C003022	SE_00117	chr19	39225437	39226327	890	91.31