Super Enhancer Details

General details

Super-Enhancer ID:	SE_00118
Genomic locus:	chr10:6182494-6261722
Size/Length:	79228 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_004566
Gene Symbol:	PFKFB3
Chromosome:	chr10
TSS:	6244839 (Transcription start site)
TES:	6277507 (Transcription end site)
Strand:	+
Number of Exons:	15
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr10:6182494-6261722
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00118

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C000713	SE_00118	chr10	6182494	6184852	2358	910.89
C000714	SE_00118	chr10	6185420	6189101	3681	798.25
C000715	SE_00118	chr10	6192579	6196143	3564	746.38
C000716	SE_00118	chr10	6198788	6201398	2610	504.22
C000717	SE_00118	chr10	6203859	6208173	4314	3100
C000718	SE_00118	chr10	6208787	6222014	13227	3100
C000719	SE_00118	chr10	6222846	6225924	3078	753.11
C000720	SE_00118	chr10	6226341	6227855	1514	177.6
C000721	SE_00118	chr10	6228266	6231334	3068	700.11
C000722	SE_00118	chr10	6231971	6247895	15924	3100
C000723	SE_00118	chr10	6249566	6251648	2082	264.09
C000724	SE_00118	chr10	6252685	6257496	4811	1199.24
C000725	SE_00118	chr10	6260396	6261722	1326	109.3