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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00119
Genomic locus: chr22:25939887-26098355
Size/Length: 158468 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_005160
Gene Symbol: ADRBK2
Chromosome: chr22
TSS: 25960860 (Transcription start site)
TES: 26125258 (Transcription end site)
Strand: +
Number of Exons: 21
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr22:25939887-26098355
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00119

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C003846 SE_00119 chr22 25939887 25941046 1159 95.32
C003847 SE_00119 chr22 25949826 25956205 6379 1508.92
C003848 SE_00119 chr22 25958248 25968180 9932 3100
C003849 SE_00119 chr22 25968204 25973467 5263 1524.95
C003850 SE_00119 chr22 25974047 25975185 1138 122.08
C003851 SE_00119 chr22 25977938 25983401 5463 1196.94
C003852 SE_00119 chr22 25983565 25985170 1605 146.54
C003853 SE_00119 chr22 25996318 25998485 2167 151.13
C003854 SE_00119 chr22 26007873 26010122 2249 182.8
C003855 SE_00119 chr22 26010506 26013663 3157 255.68
C003856 SE_00119 chr22 26017659 26019400 1741 90.46
C003857 SE_00119 chr22 26021819 26025037 3218 419.49
C003858 SE_00119 chr22 26025805 26027750 1945 311.2
C003859 SE_00119 chr22 26030812 26033640 2828 130.71
C003860 SE_00119 chr22 26039194 26042317 3123 262
C003861 SE_00119 chr22 26045915 26047933 2018 136.56
C003862 SE_00119 chr22 26052821 26055906 3085 234.88
C003863 SE_00119 chr22 26055944 26059478 3534 917.53
C003864 SE_00119 chr22 26059557 26066474 6917 2464.81
C003865 SE_00119 chr22 26074615 26076636 2021 310.23
C003866 SE_00119 chr22 26076685 26082170 5485 1008.01
C003867 SE_00119 chr22 26085672 26089717 4045 388.12
C003868 SE_00119 chr22 26092374 26094880 2506 205.59
C003869 SE_00119 chr22 26097022 26098355 1333 104.29