Super Enhancer Details

General details

Super-Enhancer ID:	SE_00120
Genomic locus:	chr8:13300752-13374693
Size/Length:	73941 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_024767
Gene Symbol:	DLC1
Chromosome:	chr8
TSS:	12940871 (Transcription start site)
TES:	12973753 (Transcription end site)
Strand:	-
Number of Exons:	14
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr8:13300752-13374693
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00120

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005626	SE_00120	chr8	13300752	13307318	6566	3100
C005627	SE_00120	chr8	13309334	13320099	10765	3100
C005628	SE_00120	chr8	13320101	13324386	4285	610.14
C005629	SE_00120	chr8	13326487	13331352	4865	3100
C005630	SE_00120	chr8	13332646	13334266	1620	148.81
C005631	SE_00120	chr8	13335859	13337288	1429	143.91
C005632	SE_00120	chr8	13348694	13350086	1392	95.61
C005633	SE_00120	chr8	13354839	13356369	1530	253.97
C005634	SE_00120	chr8	13356612	13361251	4639	1595.97
C005635	SE_00120	chr8	13362668	13374693	12025	3100