Super Enhancer Details

General details

Super-Enhancer ID:	SE_00121
Genomic locus:	chr10:104354819-104419024
Size/Length:	64205 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_030912
Gene Symbol:	TRIM8
Chromosome:	chr10
TSS:	104404251 (Transcription start site)
TES:	104418076 (Transcription end site)
Strand:	+
Number of Exons:	6
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr10:104354819-104419024
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00121

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C001021	SE_00121	chr10	104354819	104365558	10739	3100
C001022	SE_00121	chr10	104368529	104374374	5845	3100
C001023	SE_00121	chr10	104378915	104383644	4729	1186.94
C001024	SE_00121	chr10	104383952	104390024	6072	3100
C001025	SE_00121	chr10	104391956	104393644	1688	183.94
C001026	SE_00121	chr10	104400925	104411742	10817	3100
C001027	SE_00121	chr10	104416709	104419024	2315	289.8