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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00122
Genomic locus: chr10:126313755-126446862
Size/Length: 133107 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_212554
Gene Symbol: METTL10
Chromosome: chr10
TSS: 126446399 (Transcription start site)
TES: 126480510 (Transcription end site)
Strand: -
Number of Exons: 7
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr10:126313755-126446862
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00122

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C001130 SE_00122 chr10 126313755 126315501 1746 171.27
C001131 SE_00122 chr10 126317085 126319238 2153 415.25
C001132 SE_00122 chr10 126328655 126331136 2481 351.86
C001133 SE_00122 chr10 126333938 126338967 5029 1763.65
C001134 SE_00122 chr10 126341094 126344411 3317 431.64
C001135 SE_00122 chr10 126356333 126358220 1887 297.12
C001136 SE_00122 chr10 126358915 126367882 8967 3100
C001137 SE_00122 chr10 126368048 126370436 2388 431.68
C001138 SE_00122 chr10 126370958 126376265 5307 1071.96
C001139 SE_00122 chr10 126384261 126386381 2120 436.49
C001140 SE_00122 chr10 126387883 126400039 12156 3100
C001141 SE_00122 chr10 126400961 126403129 2168 280.76
C001142 SE_00122 chr10 126406591 126408553 1962 244.62
C001143 SE_00122 chr10 126409432 126414243 4811 1886.17
C001144 SE_00122 chr10 126415891 126418676 2785 424.59
C001145 SE_00122 chr10 126420286 126432669 12383 3118.49
C001146 SE_00122 chr10 126433020 126434552 1532 245.71
C001147 SE_00122 chr10 126436905 126438903 1998 329.77
C001148 SE_00122 chr10 126445606 126446862 1256 128.49