Toggle navigation

  • Home
  • Browse Database
  • Detailed Search
  • Visualize & Send Data
  • Download Data
  • Overlap Analysis
  • Statistics
  • Documentation
  • Data Sources
  • Submit Data
  • Contact Us
  • News & Tweets

Follow @dbSUPER_THU

Super Enhancer Details

  1. Home
  2. Browse
  3. Details

General details

Super-Enhancer ID: SE_00124
Genomic locus: chr17:40361398-40482407
Size/Length: 121009 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_012448
Gene Symbol: STAT5B
Chromosome: chr17
TSS: 40351194 (Transcription start site)
TES: 40428424 (Transcription end site)
Strand: -
Number of Exons: 19
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr17:40361398-40482407
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00124

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C002659 SE_00124 chr17 40361398 40363233 1835 296.55
C002660 SE_00124 chr17 40363344 40365556 2212 698.13
C002661 SE_00124 chr17 40365862 40367432 1570 197.78
C002662 SE_00124 chr17 40379187 40381188 2001 434.06
C002663 SE_00124 chr17 40392173 40393399 1226 100.9
C002664 SE_00124 chr17 40395263 40397421 2158 422.24
C002665 SE_00124 chr17 40397623 40406249 8626 3130.54
C002666 SE_00124 chr17 40417916 40428185 10269 2255.22
C002667 SE_00124 chr17 40428394 40430248 1854 1996.84
C002668 SE_00124 chr17 40436760 40444652 7892 3100
C002669 SE_00124 chr17 40445059 40448531 3472 666.06
C002670 SE_00124 chr17 40457749 40459180 1431 147.87
C002671 SE_00124 chr17 40459823 40464835 5012 1194.13
C002672 SE_00124 chr17 40465046 40466722 1676 153.51
C002673 SE_00124 chr17 40470990 40473401 2411 298.38
C002674 SE_00124 chr17 40473974 40475595 1621 185.01
C002675 SE_00124 chr17 40480019 40482407 2388 1064.43