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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00125
Genomic locus: chr7:47472005-47561400
Size/Length: 89395 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_138295
Gene Symbol: PKD1L1
Chromosome: chr7
TSS: 47814249 (Transcription start site)
TES: 47988071 (Transcription end site)
Strand: -
Number of Exons: 57
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr7:47472005-47561400
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00125

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C005356 SE_00125 chr7 47472005 47473651 1646 215.72
C005357 SE_00125 chr7 47476186 47477501 1315 104.45
C005358 SE_00125 chr7 47477988 47488491 10503 1841.67
C005359 SE_00125 chr7 47489545 47490532 987 93.82
C005360 SE_00125 chr7 47491115 47495778 4663 3100
C005361 SE_00125 chr7 47496420 47498168 1748 127.65
C005362 SE_00125 chr7 47498594 47508000 9406 2718.6
C005363 SE_00125 chr7 47508859 47524090 15231 2826.02
C005364 SE_00125 chr7 47524848 47526309 1461 126.58
C005365 SE_00125 chr7 47527024 47529752 2728 332.75
C005366 SE_00125 chr7 47532113 47539209 7096 1211.01
C005367 SE_00125 chr7 47540609 47544492 3883 527.61
C005368 SE_00125 chr7 47545640 47549024 3384 548.95
C005369 SE_00125 chr7 47549439 47551424 1985 167.23
C005370 SE_00125 chr7 47551505 47554843 3338 664.97
C005371 SE_00125 chr7 47557841 47561400 3559 1568.7