Super Enhancer Details

General details

Super-Enhancer ID:	SE_00126
Genomic locus:	chr2:55197748-55279808
Size/Length:	82060 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_007008
Gene Symbol:	RTN4
Chromosome:	chr2
TSS:	55199326 (Transcription start site)
TES:	55277734 (Transcription end site)
Strand:	-
Number of Exons:	8
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr2:55197748-55279808
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00126

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C003268	SE_00126	chr2	55197748	55199077	1329	94.24
C003269	SE_00126	chr2	55201745	55205515	3770	548
C003270	SE_00126	chr2	55206066	55209055	2989	583.43
C003271	SE_00126	chr2	55209087	55214329	5242	1120.26
C003272	SE_00126	chr2	55215420	55216973	1553	122.89
C003273	SE_00126	chr2	55218430	55221471	3041	405.86
C003274	SE_00126	chr2	55222713	55230874	8161	1181.52
C003275	SE_00126	chr2	55231479	55243707	12228	3100
C003276	SE_00126	chr2	55243797	55259237	15440	625.77
C003277	SE_00126	chr2	55259498	55263196	3698	378.86
C003278	SE_00126	chr2	55263780	55266378	2598	190.49
C003279	SE_00126	chr2	55267025	55271018	3993	986.35
C003280	SE_00126	chr2	55271358	55279808	8450	3100